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TitleBA.2.86 S-trimer in complex with Nab XGv280
AuthorsZhu Q, Liu P
MethodSingle Particle(Reported Resolution 3.75 Å)PDB:8y4c
EMDB image
Primary CitationEnhancing RBD exposure and S1 shedding by an extremely conserved SARS-CoV-2 NTD epitope. Zhu Q, Liu P, Liu S, Yue C, Wang X Signal Transduct Target Ther (2024) PubMed DOI show all entries for this citation
Funding SourceNot funded
StatusDepositedReleasedLast Update
REL2024-01-302024-09-042024-11-06

Name: BA.2.86 S-trimer in complex with Nab XGv280SpecimenType: particle MW: 0.489 MDa pH: 7.4

Component Typescomplex
Component Names

BA.2.86 S-trimer in complex with Nab XGv280

Molecular Typesligand, protein
Molecule Names
  • 2-acetamido-2-deoxy-beta-D-glucopyranose
  • Spike glycoprotein
  • XGv280 Heavy chain
  • XGv280 Light chain
Sources

Homo sapiens ncbi:9606

Severe acute respiratory syndrome... ncbi:2697049

Ligand IDs: NAG

Specimen Preparationvitrification
MicroscopeFEI TITAN (60 kV)
DetectorGATAN K2 SUMMIT (4k x 4k)
Electron Dose60 (e/sq. Å)
Number of Particles109404
Map File Size131 Mbytes
Voxel Dimensions (Å)1.04 x 1.04 x 1.04
Map Dimensions (voxels) 320 x 320 x 320
Map Data Type IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Density StatisticsMin -1.353Max 2.389Avg 0Std 0.068
Recommended Contour Level0.5 (7.3 σ)
Mol*3DViewer Map Visual Analysis @ EMDB
Header Metadataemd-38915.xml emd-38915.cif.gz
Primary Mapemd_38915.map.gz (131 Mbytes)
Imagesemd_38915.png
Half Maps
emd_38915_half_map_1.map.gz
emd_38915_half_map_2.map.gz
Fitted PDB8y4c


Current: files.wwpdb.org (USA)

wwPDB Map Validation Reportemd_38915_full_validation.pdf.gz
wwPDB Model Validation Report8y4c_full_validation.pdf.gz
View EMDB map entry EMD-38915: EMDB PDBj 3Dbionotes
View associated model PDB 8y4c: RCSB-PDB PDBe PDBj