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TitleCryo EM structure of human phosphate channel XPR1 at apo state
AuthorsLu Y, Yue C, Zhang L, Yao D, Yu Y, Cao Y
MethodSingle Particle(Reported Resolution 3.68 Å)PDB:8yex
EMDB image
Primary CitationStructural basis for inositol pyrophosphate gating of the phosphate channel XPR1. Lu Y, Yue CX, Zhang L, Yao D, Xia Y, Zhang Q, Zhang X, Li S, Shen Y, Cao M, Guo CR, Qin A, Zhao J, Zhou L, Yu Y, Cao Y Science (2024) PubMed DOI show all entries for this citation
Funding SourceNational Natural Science Foundation of China (NSFC)
StatusDepositedReleasedLast Update
REL2024-02-232024-10-092024-12-18

Name: Cryo EM structure of human phosphate channel XPR1 at apo stateSpecimenType: particle MW: 0.092 MDa pH: 7.5

Component Typescomplex
Component Names

Cryo EM structure of human phosphate channel XPR1 at apo state

Molecular Typesprotein
Molecule Names
  • Solute carrier family 53 member 1
Sources

Homo sapiens ncbi:9606

Specimen Preparationvitrification
MicroscopeFEI TITAN KRIOS (300 kV)
DetectorGATAN K3 (6k x 4k)
Electron Dose50 (e/sq. Å)
Number of Particles215129
Map File Size67 Mbytes
Voxel Dimensions (Å)1.1 x 1.1 x 1.1
Map Dimensions (voxels) 256 x 256 x 256
Map Data Type IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Density StatisticsMin -1.725Max 2.442Avg -0.001Std 0.053
Recommended Contour Level0.5 (9.5 σ)
Mol*3DViewer Map Visual Analysis @ EMDB
Header Metadataemd-39204.xml emd-39204.cif.gz
Primary Mapemd_39204.map.gz (67 Mbytes)
Imagesemd_39204.png
FSC Curvesemd_39204_fsc.xml
Half Maps
emd_39204_half_map_1.map.gz
emd_39204_half_map_2.map.gz
Fitted PDB8yex


Current: files.wwpdb.org (USA)

wwPDB Map Validation Reportemd_39204_full_validation.pdf.gz
wwPDB Model Validation Report8yex_full_validation.pdf.gz
View EMDB map entry EMD-39204: EMDB PDBj 3Dbionotes
View associated model PDB 8yex: RCSB-PDB PDBe PDBj